Selected publications:

2009#

• Ling-Yun Wu, Xiaobo Zhou, Fuhai Li, Xiaorong Yang, Chung-Che Chang, Stephen T.C. Wong. Conditional random pattern algorithm for LOH inference and segmentation. Bioinformatics, Vol. 25, No. 1, 61-67, 2009. (PubMed: 18974074, PDF, Supplementary File)

2008#

• Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, and Xiang-Sun Zhang. A fast haplotype inference method for large population genotype data. Computational Statistics and Data Analysis, Vol. 52, No. 11, pp. 4891-4902, 2008. (Supplementary File)

2007#

• Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao and Xiang-Sun Zhang. An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors. European Journal of Operational Research, Vol. 182, No. 1, pp. 413-427, 2007.

• Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, and Xiang-Sun Zhang. Predicting gene ontology functions from protein's regional surface structures. BMC Bioinformatics, Vol. 8, 475, 2007. (PubMed: 18070366, Supplementary File)

2006#

• Ling-Yun Wu, Xiang-Sun Zhang and Ju-Liang Zhang. Capacitated facility location problem with general setup cost. Computers & Operations Research, Vol. 33, No. 5, pp. 1226-1241, 2006.

• Luonan Chen, Ling-Yun Wu, Yong Wang and Xiang-Sun Zhang. Inferring protein interactions from experimental data by association probabilistic method. Proteins: Structure, Function, and Bioinformatics, Vol. 62, pp. 833-837, 2006. (PubMed: 16395667)

• Luonan Chen, Ling-Yun Wu, Yong Wang, Shi-Hua Zhang and Xiang-Sun Zhang. Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison. BMC Structural Biology, Vol. 6, 18, 2006. (PubMed: 16948858, Software)

2005#

• Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li and Xiang-Sun Zhang. Haplotype reconstruction from SNP fragments by minimum error correction. Bioinformatics, Vol. 21, No. 10, pp. 2456-2462, 2005. (PubMed: 15731204)

2003#

• Ji-Hong Zhang, Ling-Yun Wu and Xiang-Sun Zhang. Reconstruction of DNA sequencing by hybridization. Bioinformatics, Vol. 19, No. 1, pp. 14-21, 2003. (PubMed: 12499288)